Baiz Group Publications

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*undergraduate authors are underlined

  1. Carlos R. Baiz, “Interactive Tools for Teaching Fourier Transforms“, The Biophysicist, In Press, to appear in inaugural issue (2020).  [MATLAB Software]
  2. Kwang-Im Oh, and Carlos R. Baiz, “Empirical S=O stretch vibrational frequency map“, J. Chem. Phys, In Press (2019) [PDF]
  3. Jennifer C. Flanagan, and Carlos R. Baiz, “Ultrafast pH-jump 2D IR spectroscopy”, Optics Letters, 44.20, 4937-4940, (2019).[PDF]
  4. Mason L. Valentine, Alfredo Cardenas, Ron Elber, and Carlos R. Baiz, “Calcium Interacts Preferentially with Phosphatidylserines in Mixed Lipid Membranes“, Submitted (2019).
  5. Christopher P. Baryiames, Morgan Teel, and Carlos R. Baiz, “Interfacial H-bond dynamics in reverse micelles: the role of surfactant heterogeneity“, Langmuir, 35, 11463-11470 (2019) [PDF].
  6. Kwang-Im Oh, Jennifer C. Flanagan, Carlos R. Baiz, “Quantifying dynamical heterogeneity in DMSO–water mixtures“, Submitted (2019).
  7. Sean C. Edington, D. Brent Halling, Suzanna Bennett, Thomas R. Middendorf, Richard W. Aldrich and Carlos R. Baiz, “Non-additive Effects of Binding Site Mutations in Calmodulin“, Biochemistry, 58, 24, 2730-2739, (2019) [PDF]
  8. Jennifer C. Flanagan, and Carlos R. Baiz, “Site-specific peptide probes detect buried water in a lipid membrane“, Biophysical Journal, 116, 9, 1692-1700 (2019).[PDF]
  9. Sean C. Edington, and Carlos R. Baiz, “Vibrational Relaxation in EDTA is Ion Dependent“, J. Phys.Chem. A, 122, 32, 6585–6592 (2018). [PDF]
  10. Mason L. Valentine, Alfredo E. Cardenas, Ron Elber, and Carlos R. Baiz “Physiological Calcium Concentrations Slow Dynamics at the Lipid-Water Interface“, Biophysical Journal, 115, 8, 1541-1551 (2018)[PDF]
  11. Kwang-Im Oh, and Carlos R. Baiz “Crowding Stabilizes DMSO – Water Hydrogen-bonding Interactions“, J. Phys. Chem. B., 122 (22), pp 5984–5990 (2018) [PDF]
  12. Sean C. Edington, Andrea Gonzalez, Thomas R. Middendorf, D. Brent Halling, Richard W. Aldrich, and Carlos R. Baiz, “Coordination to lanthanide ions distorts binding site conformation in calmodulin“, PNAS, 115 (14) E3126-E3134, (2018) [DOI: 10.1073/pnas.1722042115]
  13. Kwang-Im Oh, Kavya Rajesh, John F. Stanton, and Carlos R. Baiz, “Quantifying Hydrogen-Bond Populations in Dimethyl Sulfoxide/Water Mixtures“, Angewandte Chemie, 56, 11375 (2017) [DOI: 10.1002/ange.201704162]
  14. Sean Coleman Edington, Jennifer C. Flanagan, and Carlos R. Baiz, “An Empirical IR Frequency Map for Ester C=O Stretching Vibrations“, J. Phys. Chem. A, 120, 3888 (2016) [PDF]

Prior to UT:

  1. Xin-Xing Zhang, Kevin C. Jones, Ann Fitzpatrick, Chunte Sam Peng, Chi-Jui Feng, Carlos R. Baiz, and Andrei Tokmakoff, “Studying Protein-Protein Binding Through T-Jump Induced Dissociation: Transient 2D IR Spectroscopy of Insulin Dimer“, J. Phys. Chem. B, ASAP (2016) [PDF]Insulin_Paper_Abstract
  2. Paul Stevenson, Christoph Götz, Carlos R. Baiz, Jasper Akerboomf, Andrei Tokmakoff and Alipasha Vaziri, “Visualizing KcsA conformational changes upon ion binding by atomistic modeling of infrared spectroscopy” J. Phys. Chem. B, 118, 5824 (2015) [PDF]Stevenson_JPCA_2015
  3. Carlos R. Baiz, and Andrei Tokmakoff “Structural Disorder of Folded Proteins: Isotope-Edited 2D IR Spectroscopy and Markov State Modeling” Biophys J. 108, 7, 1747 (2015) [PDF]Baiz_Biophys_J_2015
  4. Carlos R. Baiz, Denise Schach, and Andrei Tokmakoff, “Ultrafast 2D IR microscopy” Optics Express, 22, 18724 (2014) [PDF]Baiz_OptExp_2014
  5. Carlos R. Baiz, Yu-Shan Lin, Chunte Sam Peng, Kyle A. Beauchamp, Vincent A. Voelz, Vijay S. Pande, and Andrei Tokmakoff “A Molecular Interpretation of 2D IR Protein Folding Experiments with Markov State Models“, Biophysical Journal, 106, 1359 (2014) [PDF]Baiz_Biophys_J_2014
  6. Chunte Sam Peng, Carlos R. Baiz, Andrei Tokmakoff, “Direct observation of ground-state lactam-lactim tautomerization using temperature-jump transient 2D IR spectroscopy”, Proc. Nat. Acad. Sci. 110, 9243-9248 (2013) [PDF]Peng_PNAS_2013
  7. Bowu Luan, Bing Shan, Carlos R. Baiz, Andrei Tokmakoff, and Daniel P. Raleigh, “Cooperative Cold Denaturation: The Case of the C-Terminal Domain of Ribosomal Protein L9”, Biochem. 52, 2402-2409 (2013) [PDF]Luan_Biochem_2013
  8. Carlos R. Baiz, Mike Reppert, and Andrei Tokmakoff, “Amide I Two-Dimensional Infrared Spectroscopy: Methods for Visualizing the Vibrational Structure of Large Proteins”, J. Phys. Chem. A.  117, 5955-5961 (2013) [PDF]Baiz_JPCA_2013
  9. Jessica M. Anna, Carlos R. Baiz, Matthew R. Ross, Robert McCanne, and Kevin J. Kubarych,  Ultrafast equilibrium and non-equilibrium chemical reaction dynamics probed with multidimensional infrared spectroscopy, Int. Rev. Phys. Chem. 3, 367 (2012) [PDF]Anna_IntRevPhysChem_2012
  10. Carlos R. Baiz, Chunte S. Peng, Michael E. Reppert, Kevin C. Jones, and Andrei Tokmakoff, “Coherent two-dimensional infrared spectroscopy: Quantitative analysis of protein secondary structure in solution”, Analyst, 137, 1793-1799 (2012) [PDF]Baiz_Analyst_2012
  11. Carlos R. Baiz, Kevin J. Kubarych, Eitan Geva and Edwin L. Sibert III, “Local-mode approach to modeling multidimensional infrared spectra of metal carbonyls”,  J. Phys. Chem. A. 115 (21), 5354 ,(2011) [PDF]Baiz_JPCA_2011
  12. Carlos R. Baiz, Kevin J. Kubarych, and Eitan Geva, “Molecular Theory and Simulation of Coherence Transfer in Metal Carbonyls and Its Signature on Multidimensional Infrared Spectra” J. Phys. Chem. B, 115, (18) , 5322, (2011) [PDF]Baiz_JPCA_2010
  13. Carlos R. Baiz, and Kevin J. Kubarych and Eitan Geva, “Ultrabroadband Detection of an Infrared Continuum by Chirped-Pulse Upconversion” Optics Letters, 36 (2) 187, (2011) [PDF]Baiz_OptLett_2011
  14. John T. King, Carlos R. Baiz and Kevin J. Kubarych. “Solvent-Dependent Spectral Diffusion in a Hydrogen Bonded “Vibrational Aggregate”” J. Phys. Chem. A. 114 (39) 10590 (2010) [PDF]King_JPCA_2010
  15. Carlos R. Baiz and Kevin J. Kubarych, “Ultrafast Transient Vibrational Stark Spectroscopy: Exploring Excited-State Charge-Transfer by Measuring the Solvent Response”,  J. Amer. Chem. Soc (Comm), 132 (37), 12784-12785 (2010) [PDF]Baiz_JACS_2010
  16. Carlos R. Baiz, Robert McCanne, and Kevin J. Kubarych, “Transient vibrational echo versus transient absorption spectroscopy: A direct experimental and theoretical comparison”, Applied Spectroscopy, 64 (9) 1037-1044 (2010) [PDF]Baiz_ApplSpec_2010
  17. Jessica. M. Anna, Matthew. J. Nee, Carlos. R. Baiz, Robert. McCanne, Kevin. J. Kubarych, “Measuring Absorptive Two-Dimensional Infrared Spectra Using Chirped-Pulse Upconversion Detection”,  J. Opt. Soc. Am. B, 27, 382-393 (2010) [PDF]Anna_JOSAB_2010
  18. Carlos R. Baiz, Robert McCanne, and Kevin J. Kubarych, “Structurally Selective Geminate Rebinding Dynamics of Solvent-Caged Radicals Studied with Nonequilibrium Infrared Echo Spectroscopy”, J. Amer. Chem. Soc, 131 (38), 13590, (2009) [PDF]Baiz_JACS_2009
  19. Carlos R. Baiz, Porscha L. McRobbie, Nicholas K. Preketes, Kevin J. Kubarych, and Eitan Geva, “Two-Dimensional Infrared Spectroscopy of Dimanganese Decacarbonyl and Its Photoproducts: An Ab Initio Study”, J. Phys. Chem. A, 113, (35), 9617, (2009) [PDF]Baiz_JPCA_2009_3
  20. Carlos R. Baiz, Robert McCanne, Matthew J. Nee, and Kevin J. Kubarych, “Orientational dynamics of transient molecules measured by non-equilibrium two-dimensional infrared spectroscopy”,  J. Phys. Chem A, 113 (31), 8907, (2009) [PDF]Baiz_JPCA_2009_2
  21. Carlos R. Baiz, Porscha L. McRobbie, Jessica M. Anna, Eitan Geva, and Kevin J. Kubarych, “Two-dimensional Spectroscopy of Metal Carbonyls”,  Accounts of Chemical Research, 42, (9), 1395, (2009) [PDF]Baiz_AccChemRes_2009
  22. Carlos R. Baiz, Sarah J. Ledford, Kevin J Kubarych, and Barry D. Dunietz, “Beyond 7-Azaindole:  Conjugation Effects on Intermolecular Double Hydrogen-atom Transfer Reactions”, J. Phys. Chem A., 113 (17), 4862, (2009) [PDF]Baiz_JPCA_2009
  23. Carlos R. Baiz, Matthew J. Nee, Robert McCanne, and Kevin J. Kubarych, “Ultrafast non-equilibrium Fourier-transform two-dimensional infrared spectroscopy”, Optics Letters, 33, 2533, (2008) [PDF]
    Baiz_OptLett_2008
  24. Matthew J. Nee, Carlos R. Baiz, Jessica M. Anna, Robert McCanne, and Kevin J. Kubarych, “Multilevel vibrational coherence transfer and wavepacket dynamics probed with multidimensional IR spectroscopy”, J. Chem. Phys. 129, 084503. (2008) [PDF]Nee_JCP_2008
  25. Carlos R. Baiz and Barry D. Dunietz, “Theoretical Studies of Conjugation Effects on Excited State Intramolecular Hydrogen-Atom Transfer Reactions in Model Systems”, J. Phys. Chem. A, 111 (40), 10139, (2007) [PDF]Baiz_JPCA_2007

Book Chapter

  1. Carlos R. Baiz, Mike E. Reppert, and Andrei Tokmakoff, “An Introduction to Protein 2D IR Spectroscopy“, Ultrafast Infrared Vibrational Spectroscopy, Edited by Michael D. Fayer CRC Press, ISBN: 1466510137, (2013) [PDF]Baiz_BookChapter_2013